For groups that were recovered as paraphyletic in the phylogenetic analysis,
uses the Fish Tree of Life API to identify which species prevented that clade
from being recovered as monophyletic.
Arguments
- rank
the (possibly paraphyletic) rank for which rogue or intruder species should be identified.
Value
A vector of species names, potentially empty.
References
Rabosky, D. L., Chang, J., Title, P. O., Cowman, P. F., Sallan, L., Friedman, M., Kashner, K., Garilao, C., Near, T. J., Coll, M., Alfaro, M. E. (2018). An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559(7714), 392–395. doi:10.1038/s41586-018-0273-1
Examples
if (FALSE) {
fishtree_rogues("Gobiidae") # several rogue taxa!
fishtree_rogues("Labridae") # nice and monophlyetic
}